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Publications

 

38. Mitu C. Acharjee, Haopeng Li, Ryan Rollings, Bo Ma, Steve Tung, and Jiali Li, "Tau and tubulin protein aggregation characterization by solid-state nanopore method and atomic force microscopy", Journal of Applied Physics 133, 024701 (2023) https://doi.org/10.1063/5.0123688

37. O.M. Eggenberger, G. Leriche, T. Koyanagi, C. Ying, J. Houghtaling, T.B.H. Schroeder, Yang, Jerry, Li, Jiali, Hall, Adam R. M. Mayer, "Fluid surface coatings for solid-state nanopores: comparison of phospholipid bilayers and archaea-inspired lipid monolayers", Nanotechnology, 30 (2019) 325504.

36. J. Houghtaling, C. Ying, O.M. Eggenberger, A. Fennouri, S. Nandivada, M. Acharjee, Li, Jiali, Hall, Adam R. M. Mayer, "Estimation of Shape, Volume, and Dipole Moment of Individual Proteins Freely Transiting a Synthetic Nanopore", ACS Nano, (2019).

 

35. Kaur, Harpreet; Nandivada, Santoshi; Acharjee, Mitu; McNabb, David; Li, Jiali. "Estimate RNAP protein binding sites on λ DNA using Solid-State Nanopores". ACS Sensors. Publication Date (Web): December 18, 2018. DOI: 10.1021/acssensors.8b00976

34. Changbae Hyun, Harpreet Kaur, Tao Huang, and Jiali Li. "A tip-attached tuning fork sensor for the control of DNA translocation through a nanopore ".  Rev. Sci. Instrum. Feb. 2017

33. E. C. Yusko1, B. R. Bruhn1, O. Eggenberger, J. Houghtaling, Ryan C. Rollings, N. C. Walsh, S. Nandivada, M. Pindrus, A. R. Hall, D. Sept, Jiali Li, D. S. Kalonia and Michael Maye. “Real-time shape approximation and fingerprinting of single proteins using a nanopore". Nature Nanotechnology. 19 December 2016

32. Hyun, Changbae; Kaur, Harpreet; McNabb, David; Li, Jiali. “Dielectrophoretic Stretching of DNA Tethered to a Fiber Tip". Nanotechnology. 2015. 26 (12) P12550. doi:10.1088/0957-4484/26/12/125501

31. Sugimoto, Manabu; Kato, Yuta; Ishida, Kentaro; Hyun, Changbae; Li, Jiali; Mitsui, Toshiyuki. “: "DNA Motion Induced by Electrokinetic Flow near an Au Coated Nanopore Surface as Voltage Controlled Gate". Nanotechnology. 2015. 26 (6) P065502. doi:10.1088/0957-4484/26/6/065502

30. Rollings, Ryan; Graef, Edward; Walsh, Nathan; Nandivada, Santoshi; Benamara, Mourad; Li, Jiali. "The effects of geometry and stability of solid-state nanopores on detecting single DNA molecules".  Nanotechnology. 2015. 26 (4), P044001. published on line on Jan. 5, 2015. doi:10.1088/0957-4484/26/4/044001

29.  Jiali Li, Daniel Fologea, Ryan Rollings and Brad Ledden. “Characterization of Protein Unfolding with Solid-state Nanopores” Protein & Peptide Letters, 2014, 21 (3). P256. (pdf)

28.   Changbae Hyun, Harpreet Kaur, Ryan Rollings, Min Xiao, and Jiali Li. “Threading Immobilized DNA Molecules through a Solid-State Nanopore at >100 μs per Base Rate” ACS Nano, 2013. 7(7), P 5892–5900. (pdf)

27.   Ando, G., C. Hyun, J. Li and T. Mitsui, Directly Observing the Motion of DNA Molecules near Solid-State Nanopores. ACS Nano, 2012. 6(11): p. 10090–10097. (pdf)

26.    Hyun, C., Rollings, R. & Li, J. Probing Access Resistance of Solid-State Nanopores with a Scanning-Probe Microscope Tip. Small 8, 385–392 (2012). (PDF)

25.    Yusko, E. C. et al. Single-particle characterization of ABeta oligomers in solution. ACS Nano 6, 5909–5919 (2012). (PDF)

24.    Uplinger, J., B. Thomas, R. Rollings, D. Fologea, D. McNabb and J. Li, K+, Na+, and Mg2+on DNA Translocation in Silicon Nitride Nanopores. Electrophoresis, 2012. 33(23): p. 3448–3457. (pdf)

23.    Rollings, R. C., McNabb, D. S. & Li, J. DNA Characterization with Ion Beam-Sculpted Silicon Nitride Nanopores. Nanopore-Based Technology 870, 79–97 (2012).

22.    Yusko, E. C. et al. Controlling protein translocation through nanopores with bio-inspired fluid walls. Nature Nanotechnology 6, 253–260 (2011). (PDF) (Supplemental Information) (Nature Nano News feature)

21.    Ledden, B., Fologea, D., Talaga, D. S. & Li, J. Sensing Single Protein Molecules with Solid-State Nanopores. Nanopores 129–150 (2011). (PDF)

20.    Li, J. & Talaga, D. S. The distribution of DNA translocation times in solid-state nanopores. Journal of Physics: Condensed Matter 22, 454129 (2010). (PDF)

19.    George, H. B. et al. Nanopore fabrication in amorphous Si: Viscous flow model and comparison to experiment. Journal of Applied Physics 108, 014310–014310–8 (2010). (PDF)

18.    Rollings, R. & Li, J. Emerging Technologies: Nanopore Sequencing for Mutation Detection. The Handbook of Plant Mutation Screening 339–354 (2010).

17.    Talaga, D. S. & Li, J. Single-Molecule Protein Unfolding in Solid State Nanopores. J. Am. Chem. Soc. 131, 9287–9297 (2009). (PDF) (Supplemental Information)

16.    Li, J. & Golovchenko, J. A. Solid-State Nanopore for Detecting Individual Biopolymers. Micro and Nano Technologies in Bioanalysis 544, 81–93 (2009).

15.    Fologea, D., Brandin, E., Uplinger, J., Branton, D. & Li, J. DNA Conformation and Base Number Simultaneously Determined in a Nanopore. Electrophoresis 28, 3186–3192 (2007). (PDF)

14.    Fologea, D., Ledden, B., McNabb, D. S. & Li, J. Electrical characterization of protein molecules by a solid-state nanopore. Applied Physics Letters 91, 053901–053901–3 (2007). (PDF) (Supplemental Information)

13.    Cai, Q., Ledden, B., Krueger, E., Golovchenko, J. A. & Li, J. Nanopore sculpting with noble gas ions. Journal of Applied Physics 100, 024914–024914–6 (2006). (PDF)

12.    Fologea, D., Uplinger, J., Thomas, B., McNabb, D. S. & Li, J. Slowing DNA Translocation in a Solid-State Nanopore. Nano Lett. 5, 1734–1737 (2005). (PDF)

11.    Fologea, D. et al. Detecting Single Stranded DNA with a Solid State Nanopore. Nano Lett. 5, 1905–1909 (2005). (PDF) (Small highlight) (Nanowerk Spotlight)

10.    Stein, D. M., McMullan, C. J., Li, J. & Golovchenko, J. A. Feedback-controlled ion beam sculpting apparatus. Review of Scientific Instruments 75, 900–905 (2004). (PDF)

9.      Li, J., Gershow, M., Stein, D., Brandin, E. & Golovchenko, J. A. DNA molecules and configurations in a solid-state nanopore microscope. Nature Materials 2, 611–615 (2003). (PDF) (Nature Materials News feature)

8.      Stein, D., Li, J. & Golovchenko, J. A. Ion-Beam Sculpting Time Scales. Phys. Rev. Lett. 89, (2002). (PDF)

7.      Li, J. Derek Stein, Ciaran McMullan, Daniel Branton, Michael J. Aziz, and Jene Golovchenko. Ion-beam sculpting at nanometre length scales. Nature 412, 166–169 (2001). (PDF)

6.      Li, J., Takahashi, E. & Gunner, M. R. −DeltaGAB and pH Dependence of the Electron Transfer from P+QA-QB to P+QAQB- in Rhodobacter sphaeroides Reaction Centers. Biochemistry 39, 7445–7454 (2000). (PDF)

5.      Li, J., Coleman, W. J., Youvan, D. C. & Gunner, M. R. Characterization of a symmetrized mutant RC with 42 residues from the QA site replacing residues in the QB site. Photosynth. Res. 64, 41–52 (2000). (PDF)

4.      Li, J., Gilroy, D., Tiede, D. M. & Gunner, M. R. Kinetic Phases in the Electron Transfer from P+QA-QB to P+QAQB- and the Associated Processes in Rhodobacter sphaeroides R-26 Reaction Centers. Biochemistry 37, 2818–2829 (1998). (PDF)

3.      Li, J. L., Coleman, W. J., Youvan, D. C. & Gunner, M. R. Characterization of a Rhodobacter capsulatus reaction center mutant with the Q(B) site made more like Q(A) site. Photosynthesis: From Light to Biosphere 1, 715–718 (1995).

2.      Stallworth, P. E. et al. Sodium-23 NMR and complex impedance studies of gel electrolytes based on poly (acrylonitrile). Solid State Ionics 73, 119–126 (1994).

1.      Zhang, S., Zhu, J., Li, J. & Khanna, F. C. Surface Characteristics Analyses of Gas Sensing Materials Sb-doped SnO2. Proceedings of the Surface Canada ’89 Meeting (1989).

 

Patents

 

7.  2013_ Hyun, C.; H. Kaur, R. Rollings, J. Li. “METHOD AND DEVICE FOR CONTROLLED TRANSLOCATING A SEQUENCE OF NUCLEOTIDES THROUGH A SOLID-STATE NANOPORE”. U. S.  Provisional App. Serial No. 61774238

6.  2010__Golovchenko, J. A.; Li, J.; Stein, D.; Gershow, M. H. “Study of polymer molecules and conformations with a nanopore”.  U.S. Patent # 7,846,738

5.     2007 Jiali Li, Derek M. Stein, Gregor M. Schurmann, Gavin M. King, Jene Golovchenko, Daniel Branton, Michael Aziz. “Solid State Molecular Probe Device.” U.S. Patent Number 7,258,838.

4.     2006 Jene A. Golovchenko, Derek M. Stein, Jiali Li. “Pulsed Ion Beam Control of Solid State Features.” U.S. Patent Number 7,118,657.

3.     2004 Golovchenko, J.A.; Branton; Daniel; Aziz; Michael J.; Li, Jiali; Stein, Derek; McMullan, Ciaran J. “Control of solid state dimensional features.” U.S. Patent Number 6,783,643.

2.     2003 Daniel Branton, Jene A. Golovchenko, Timothy J. Denison, Derek Stein, and Jiali Li. “Molecular and atomic scale evaluation of biopolymers.” U.S. Patent Number 6,627,067.

1.     2002 Golovchenko, J.A., D. Branton, D. Stein, C. McMullan, and J. Li.  “Control of solid state dimensional features.” U.S. Patent Number 6,464,842.